STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EF2567Hypothetical selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP. (323 aa)    
Predicted Functional Partners:
SELA
Hypothetical L-seryl-tRNA(ser) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.993
PBPRB1539
Hypothetical selenocysteine-specific translation elongation factor; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.939
PBPRB1551
Hypothetical thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
    
 0.937
Z0657
Hypothetical ATPase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
   
 0.932
C1025
Putative thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
     
 0.916
PLU2551
Putative selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
  
  
 
0.911
GRDE
Hypothetical glycine reductase proprotein GrdE; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.858
GRDB
Hypothetical glycine reductase complex selenoprotein B; Predicted by orpheus program; predicted by glimmer program.
     
 0.842
PLU3283
Putative aminotransferase NifS, class V; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
 
 0.778
TRXA-2
Hypothetical thioredoxin; Predicted by orpheus program; predicted by glimmer program; Belongs to the thioredoxin family.
     
 0.685
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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