STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C4676Hypothetical ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (139 aa)    
Predicted Functional Partners:
Z5252
Putative ribose ABC transporter, periplasmic D-ribose-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.983
PLU0057
Putative ribose ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.981
ECS4691
Putative ribose ABC transporter; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.958
SF3835
Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.958
ATU4322
Putative ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.931
CTC00906
Putative sugar ABC transporter (permease); Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.923
CV3017
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.923
ATU4551
Putative sugar ABC transporter, periplasmic sugar-binding; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.918
PBPRB0019
Putative AraH,Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.912
RB0303
Putative ATP-binding protein of ABCtransporter; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.839
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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