STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RBSRPutative ribose operon repressor, rbsR; Predicted by orpheus program; predicted by glimmer program. (333 aa)    
Predicted Functional Partners:
PBPRB0217
Hypothetical phosphoenolpyruvate-protein phosphotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PEP-utilizing enzyme family.
   
 
 0.752
C3973
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.736
BH1728
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.736
SF3835
Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.723
SF2737
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.625
Z5252
Putative ribose ABC transporter, periplasmic D-ribose-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
0.521
C4676
Hypothetical ribose ABC transporter protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.480
Y1488
Putative phosphocarrier protein HPr; Predicted by orpheus program; predicted by glimmer program.
 
 
   0.478
PLU0057
Putative ribose ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.454
FRUB
Putative PTS system, fructose-specific IIA/FPR component; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.452
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.