STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP1013Putative sensor histidine kinase; Predicted by orpheus program; predicted by glimmer program. (478 aa)    
Predicted Functional Partners:
OMPR-2
Putative two-component response regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.951
VV1092
Putative binding protein component of ABC sugar transporter; Predicted by orpheus program; predicted by glimmer program.
 
     0.919
OMPR-2-2
Putative DNA-binding response regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.793
SMB20219
Hypothetical DNA-binding response regulator OmpR; Predicted by orpheus program; predicted by glimmer program.
 
   0.747
VP1245
Putative response regulator; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.665
PSPTO129
Putative ABC-type sugar transport system, periplasmic component; Predicted by orpheus program; predicted by glimmer program.
  
     0.662
S1065
Putative DNA-binding response regulator TorR; Predicted by orpheus program; predicted by glimmer program.
 
   0.649
YPO0074
Putative transcriptional regulator CpxR; Predicted by orpheus program; predicted by glimmer program.
 
   0.639
S1065-2
Hypothetical DNA-binding response regulatorTorR; Predicted by orpheus program; predicted by glimmer program.
 
   0.615
XAC1221
Hypothetical two-component response regulator; Predicted by orpheus program; predicted by glimmer program.
 
   0.609
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.