STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VV1092Putative binding protein component of ABC sugar transporter; Predicted by orpheus program; predicted by glimmer program. (413 aa)    
Predicted Functional Partners:
LL0421
Putative ATPase component, ABC-type sugar transport systems; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
  
 0.987
Y0031
Putative MalK, ABC-type sugar transport systems; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Maltooligosaccharide importer (TC 3.A.1.1.1) family.
 
 
 0.949
C5003
Putative maltose ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.933
PP1013
Putative sensor histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
     0.919
SPY1301
Hypothetical ABC-type sugar transport systems,permease components; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.916
PSPTO129
Putative ABC-type sugar transport system, periplasmic component; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.913
OMPR-2
Putative two-component response regulator; Predicted by orpheus program; predicted by glimmer program.
 
     0.823
PSPTO129-2
Putative Signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
     0.673
CV0979
Putative PTS system, glucose-specific IIBC component; Predicted by orpheus program; predicted by glimmer program.
     
 0.490
RS02374
Putative transmembrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.434
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.