STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPRBHypothetical extracellular protease; Predicted by orpheus program; predicted by glimmer program. (522 aa)    
Predicted Functional Partners:
APRE
Alkaline serine protease; Predicted by orpheus program; predicted by glimmer program.
  
  
0.928
VP1985
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.737
PBPRB0866
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.530
PBPRB1068
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.529
PBPRA1162
Hypothetical cell division protein FtsK; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.519
PBPRA1447
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.486
PBPRB1754
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.476
PBPRA0678
Hypothetical nucleotidyltransferase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.431
STY4378
Putative preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.428
PBPRA0680
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.416
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.