Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VP0623Hypothetical glycine/D-amino acid oxidase; Predicted by orpheus program; predicted by glimmer program. (409 aa)    
Predicted Functional Partners:
BPP3767
Putative 4-hydroxyphenylpyruvate dioxygenase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.918
YPO1410
Putative aspartate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
 0.903
ASPC-1
Putative amino acid biosynthesisaminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
 0.903
hisC
Putative histidinol-phosphate aminotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.900
HISC
Putative histidinol phosphate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.900
THIG
Putative thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.899
VPA0949
Putative NADH oxidase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.852
R01549
Putative glycine cleavage system T protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.800
DSDC
Hypothetical transcription regulator LysR family; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
       0.662
ALR
Putative alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.659
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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