Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
PBPRB1613Hypothetical type II secretion protein; Predicted by orpheus program; predicted by glimmer program. (529 aa)    
Predicted Functional Partners:
PILC
Putative Type IV pilin biogenesis protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.947
ETPF
Putative general secretion pathway protein F; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.938
MSHG
Putative MSHA biogenesis protein MshG; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.937
GSPE
Putative general secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 
0.927
PBPRB1614
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.920
PBPRA3473
Hypothetical general secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.899
PSPTO092
Putative leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.888
PBPRB1617
Hypothetical type IV pilin PilA; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.872
GSPG
Putative type II secretory pathway, pseudopilin EpsG; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.869
PBPRB1612
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.773
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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