STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB1617Hypothetical type IV pilin PilA; Predicted by orpheus program; predicted by glimmer program. (314 aa)    
Predicted Functional Partners:
PBPRB1613
Hypothetical type II secretion protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.872
PBPRB1614
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.869
PBPRB1615
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.773
PBPRB1616
Hypothetical polyprotein; Predicted by orpheus program; predicted by glimmer program.
       0.773
PBPRB1612
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.752
VP0139
Putative Type II secretory pathway, component EpsJ; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.732
PBPRB1618
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.732
SO0173
Hypothetical general secretion pathway protein K; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.713
PBPRB1611
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.611
PBPRA2386
Hypothetical Rec2-related protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.598
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.