Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TIORF110Hypothetical conjugal transfer protein TraF; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S26 family. (175 aa)    
Predicted Functional Partners:
PBPRB1622
Hypothetical protein TraG; Predicted by orpheus program; predicted by glimmer program.
 
     0.945
AGR_PTI_-2
Hypothetical TrbE protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.871
KLBB
Hypothetical conjugal transfer protein, TrbC; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.862
RIORF122
Hypothetical TrbG protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.856
ATU6031
Hypothetical protein TrbI; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.851
PBPRB1604
Hypothetical conjugal transfer protein TrbF; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.839
XACB0036
Hypothetical conjugal transfer protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.832
PBPRB1603
Hypothetical TrbL protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.829
MINE
Putative cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.805
RSC0785
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.751
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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