STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
R00426Putative multidrug efflux RND transporter MexF; Predicted by orpheus program; predicted by glimmer program. (1044 aa)    
Predicted Functional Partners:
XCC1439
Hypothetical RND multidrug efflux membrane fusion protein MexE; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.983
AGR_C_45
Putative multidrug efflux membrane fusion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.898
VV1128
Hypothetical HlyD family secretion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.824
VPA1579
Putative outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.814
PBPRA2126
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.812
PBPRB1678
Hypothetical periplasmic linker protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.778
VP1176
Hypothetical multidrug resistance protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.766
CBU1094
Hypothetical membrane-fusion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.760
VV12875
Hypothetical periplasmic linker protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.756
VC1675
Hypothetical membrane-fusion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.720
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.