STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATU2187Hypothetical transcriptional regulator, ArsR family; Predicted by orpheus program; predicted by glimmer program. (114 aa)    
Predicted Functional Partners:
F28B23.1
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.522
GABD
Hypothetical succinate-semialdehyde dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the aldehyde dehydrogenase family.
       0.516
NCU03445
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.509
PBPRB1646
Hypothetical oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
       0.489
PP2425
Hypothetical AraC-type DNA-binding domain-containing protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.469
VVA0998
Hypothetical transcriptional regulator, TetR family; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.419
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.