STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S3273Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (194 aa)    
Predicted Functional Partners:
KEFC
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.827
RS00549
Putative TrkA family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 0.826
VV3043
Putative glutathione-regulated potassium-effluxsystem protein KefB; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
 
 
 0.820
EF2774
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.725
SPR0370
Hypothetical alkylhydroperoxidase AhpD domain protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.666
ACPD
Putative acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
 
   
 0.538
RS05245
Putative Trp repressor-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the WrbA family.
     
 0.478
PM0161
Hypothetical nitroreductase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.457
VC2607
Putative NAD(P)H oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.435
RSC3097
Putative NAD(P)H oxidoreductase; Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefB.
 
   
 0.428
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.