STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRA0777Hypothetical short chain dehydrogenase; Predicted by orpheus program; predicted by glimmer program. (251 aa)    
Predicted Functional Partners:
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.781
STY2255
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.773
SO2777
Putative malonyl Coa-acyl carrier protein transacylase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.679
FABF-1
Beta-ketoacyl-acyl carrier protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.609
FABH
Putative 3-oxoacyl-(acyl-carrier-protein)synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
 
  
 0.573
RB5657
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.562
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.526
PBPRB1669
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
       0.526
VVA0906
Putative 3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
 
  
 0.505
VP2120
Hypothetical oxidoreductase, short-chaindehydrogenase/reductase family; Predicted by orpheus program; predicted by glimmer program.
  
     0.494
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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