Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Z2966Hypothetical bacteriophage integrase; Predicted by orpheus program; predicted by glimmer program; Belongs to the 'phage' integrase family. (326 aa)    
Predicted Functional Partners:
VP2981
Putative integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.704
RB7388
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.585
PLU4789
Hypothetical phage repressor protein C; Predicted by orpheus program; predicted by glimmer program.
  
    0.581
RB7399
Hypothetical integrase-recombinase; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.574
RB3999
Putative integrase; Predicted by orpheus program; predicted by glimmer program; Belongs to the 'phage' integrase family.
  
   
 0.518
RB3999-4
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 'phage' integrase family.
  
   
 0.515
RB3999-3
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 'phage' integrase family.
  
   
 0.513
RB3999-2
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the 'phage' integrase family.
  
   
 0.510
PLU1241
Putative xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
  
    0.488
Z4768
Hypothetical ComF-related protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.481
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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