Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB1678Hypothetical periplasmic linker protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (361 aa)    
Predicted Functional Partners:
Y3759-3
Putative transporter, AcrB/D/F family; Predicted by orpheus program; predicted by glimmer program; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.970
VP1176
Hypothetical multidrug resistance protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 
0.926
Y3759
Hypothetical transporter, AcrB/D/F family; Predicted by orpheus program; predicted by glimmer program; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.876
Y3759-2
Putative AcrB, Cation/multidrug efflux pump; Predicted by orpheus program; predicted by glimmer program; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.876
PBPRB1086
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
  0.860
ATU2483
Putative acriflavin resistence protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.815
XCC3169
Putative multidrug resistance protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.778
R00426
Putative multidrug efflux RND transporter MexF; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.778
STY3364
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
 
 0.766
PBPRB1758
Hypothetical ABC-transporter outer membrane component; Predicted by orpheus program; predicted by glimmer program.
 
 0.763
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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