STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB1714Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the cytochrome P450 family. (480 aa)    
Predicted Functional Partners:
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
 
 0.974
PLU2321
Putative AMP-binding enzyme; Predicted by orpheus program; predicted by glimmer program.
 
 0.955
SF2780
Putative sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component; Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
 
  
 
 0.907
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.902
PLU0386
Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.873
MXCG
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.844
PLU2320
Hypothetical non-ribosomal peptide synthetase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.807
PBPRB1819
Hypothetical peptide synthetase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.783
PFAA
Omega-3 polyunsaturated fatty acid synthase PfaA; Predicted by orpheus program; predicted by glimmer program.
 
 0.777
PBPRB1818
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.748
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.