STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YPO1713Putative oligogalacturonate lyase; Predicted by orpheus program; predicted by glimmer program. (388 aa)    
Predicted Functional Partners:
PELX
Hypothetical exopolygalacturonate lyase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.976
ATU3145
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.942
kduI-2
Hypothetical 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
    
 0.919
kduI
Putative 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
    
 0.910
YPO1991
Putative sugar-phosphate isomerase; Predicted by orpheus program; predicted by glimmer program.
 
     0.709
PBPRA1347
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.676
VVA1382
Putative transporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.675
VC1280
Putative deacetylase DA1; Predicted by orpheus program; predicted by glimmer program.
  
     0.655
SMA0473
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.655
VP0713
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.641
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.