STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
VVA1382Putative transporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (570 aa)    
Predicted Functional Partners:
RSC3301
Putative proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.821
YPO1713
Putative oligogalacturonate lyase; Predicted by orpheus program; predicted by glimmer program.
       0.675
PLU1241
Putative xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
    0.482
S0421
Putative adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.482
VVA1143
Putative Na+/proline symporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.468
YGJV
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.448
NE0134-10
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.432
VVA1597
Hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.415
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.