STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C3756-3Putative permease large protein, C4-dicarboxylate transport system; Predicted by orpheus program; predicted by glimmer program. (435 aa)    
Predicted Functional Partners:
S3153
Hypothetical C4-dicarboxylate transport system,small permease component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.953
C3754
Hypothetical C4-dicarboxylate binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.903
C3755
Hypothetical TRAP-type C4-dicarboxylate transport system, small permease component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.816
SMB20295
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.815
ATU3137
Hypothetical dicarboxylate-binding periplasmic protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.815
AGR_L_33
Putative C4-dicarboxylate transport system,periplasmic component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.815
BH0702
Putative small integral C4-dicarboxylate membrane transport protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.815
VC1778
Putative TRAP-type C4-dicarboxylate transport system, small permease component; Predicted by orpheus program; predicted by glimmer program.
  
 0.806
RB1267
Putative dicarboxylate-binding periplasmic protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.799
DCTP
Putative C4-dicarboxylate-binding periplasmic protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.764
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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