STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATU3145Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (106 aa)    
Predicted Functional Partners:
YPO1724
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.779
YGJV
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
       0.763
YPO1991
Putative sugar-phosphate isomerase; Predicted by orpheus program; predicted by glimmer program.
 
     0.701
kduI-2
Hypothetical 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.658
kduI
Putative 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.579
UXUA
Putative D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
     0.526
SPR0370
Hypothetical alkylhydroperoxidase AhpD domain protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.523
VV20716
Hypothetical CheY-like receiver protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.520
C4337
Putative 2-dehydro-3-deoxygluconokinase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.518
SO0096
Putative histidine utilization repressor; Predicted by orpheus program; predicted by glimmer program.
  
    0.516
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.