STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Z2874Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program. (261 aa)    
Predicted Functional Partners:
SAV1609
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.767
DUR1
Hypothetical allophanate hydrolase subunit 2; Predicted by orpheus program; predicted by glimmer program.
  
    0.716
YPO1724
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
     0.565
VV20916
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.558
VV20917
Putative DNA polymerase III; Predicted by orpheus program; predicted by glimmer program.
       0.558
T4556
Putative transcriptional regulatory protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.548
YPO1713
Putative oligogalacturonate lyase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.515
YPO1991
Putative sugar-phosphate isomerase; Predicted by orpheus program; predicted by glimmer program.
 
     0.510
ATU3145
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.510
PBPRA1281
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.477
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.