STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MLL2742Putative ATP-binding component of ABC transporter; Predicted by orpheus program; predicted by glimmer program. (400 aa)    
Predicted Functional Partners:
ATU2280
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
AGR_C_41
Putative glycine betaine-binding ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.998
HISW
Putative permease; Predicted by orpheus program; predicted by glimmer program.
 
 0.995
RA0951
Hypothetical ABC transporter, substrate binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.987
MM0040
Putative glycine betaine ABC transporter ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.911
RSC0165
Putative transmembrane protein; Predicted by orpheus program; predicted by glimmer program.
 
   
  0.685
VPA1112
Putative choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.581
ECS0359
Putative transcriptional regulator; Repressor involved in choline regulation of the bet genes.
 
   
 0.518
PBPRB1741
Hypothetical carnitine o-acyltransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the carnitine/choline acetyltransferase family.
       0.431
PM0049
Putative iron(III) ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
  
  
 
0.407
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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