STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ATU2280Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program. (282 aa)    
Predicted Functional Partners:
MLL2742
Putative ATP-binding component of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
AGR_C_41
Putative glycine betaine-binding ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
RA0951
Hypothetical ABC transporter, substrate binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.996
MM0040
Putative glycine betaine ABC transporter ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.995
HISW
Putative permease; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.911
VPA1112
Putative choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.597
C5003
Putative maltose ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
     
 0.556
SPY1301
Hypothetical ABC-type sugar transport systems,permease components; Predicted by orpheus program; predicted by glimmer program.
     
 0.556
Y0747
Putative permease; Predicted by orpheus program; predicted by glimmer program.
     
  0.540
Z5874
Putative permease; Predicted by orpheus program; predicted by glimmer program.
     
  0.540
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.