STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
VPA1112Putative choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (568 aa)    
Predicted Functional Partners:
ECS0359
Putative transcriptional regulator; Repressor involved in choline regulation of the bet genes.
 
  
 0.949
Z0399
Putative betaine aldehyde dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the aldehyde dehydrogenase family.
 
 
 0.940
WS0018
Putative outer membrane phospholipase A precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.800
psd
Putative Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
AGR_C_41
Putative glycine betaine-binding ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.764
BETT
Putative transporter, BCCT family (BetT, Choline-glycine betaine transporter); Predicted by orpheus program; predicted by glimmer program; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.688
BETT-2
Putative transporter, BCCT family; Predicted by orpheus program; predicted by glimmer program; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.688
ATU2280
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.597
MLL2742
Putative ATP-binding component of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.581
SO1064
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
  0.536
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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