STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPA1112Putative choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (568 aa)    
Predicted Functional Partners:
Z0399
Putative betaine aldehyde dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the aldehyde dehydrogenase family.
 
 
 0.934
ECS0359
Putative transcriptional regulator; Repressor involved in choline regulation of the bet genes.
 
  
 0.831
WS0018
Putative outer membrane phospholipase A precursor; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.800
psd
Putative Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.800
AGR_C_41
Putative glycine betaine-binding ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.751
SO1064
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
 0.692
PBPRB1308
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
 0.692
CV0599
Putative cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.623
ATU2280
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.568
PSPTO200
Putative cytochrome c oxidase, subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.565
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.