node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABW10391.1 | ABW13185.1 | Franean1_0935 | Franean1_3792 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | 0.973 |
ABW10391.1 | ABW13555.1 | Franean1_0935 | Franean1_4171 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: fal:FRAAL3760 putative 5'-3' exonuclease. | 0.963 |
ABW10391.1 | ABW15294.1 | Franean1_0935 | Franean1_5950 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | ATP-dependent DNA helicase, RecQ family; KEGG: fal:FRAAL1185 putative ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases. | 0.456 |
ABW10391.1 | dinB | Franean1_0935 | Franean1_5112 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.666 |
ABW10391.1 | polA | Franean1_0935 | Franean1_2043 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.982 |
ABW10391.1 | radA | Franean1_0935 | Franean1_0359 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.599 |
ABW10391.1 | recA | Franean1_0935 | Franean1_1219 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.975 |
ABW10391.1 | recA-2 | Franean1_0935 | Franean1_6708 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.975 |
ABW10391.1 | recX | Franean1_0935 | Franean1_1220 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.488 |
ABW13185.1 | ABW10391.1 | Franean1_3792 | Franean1_0935 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | 0.973 |
ABW13185.1 | ABW13555.1 | Franean1_3792 | Franean1_4171 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: fal:FRAAL3760 putative 5'-3' exonuclease. | 0.842 |
ABW13185.1 | ABW15294.1 | Franean1_3792 | Franean1_5950 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | ATP-dependent DNA helicase, RecQ family; KEGG: fal:FRAAL1185 putative ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases. | 0.794 |
ABW13185.1 | dinB | Franean1_3792 | Franean1_5112 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.796 |
ABW13185.1 | lexA | Franean1_3792 | Franean1_1232 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.933 |
ABW13185.1 | polA | Franean1_3792 | Franean1_2043 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.968 |
ABW13185.1 | radA | Franean1_3792 | Franean1_0359 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.801 |
ABW13185.1 | recA | Franean1_3792 | Franean1_1219 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.907 |
ABW13185.1 | recA-2 | Franean1_3792 | Franean1_6708 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.906 |
ABW13185.1 | recX | Franean1_3792 | Franean1_1220 | PFAM: RecA domain protein; KEGG: fal:FRAAL5719 DNA strand exchange and recombination protein with protease and nuclease activity. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.883 |
ABW13555.1 | ABW10391.1 | Franean1_4171 | Franean1_0935 | PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: fal:FRAAL3760 putative 5'-3' exonuclease. | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | 0.963 |