STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABW13229.1PFAM: transposase IS4 family protein; KEGG: ana:alr9024 transposase. (558 aa)    
Predicted Functional Partners:
ABW13228.1
Hypothetical protein.
       0.773
ABW12415.1
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mva:Mvan_5958 transposase, IS111A/IS1328/IS1533.
 
     0.626
ABW12210.1
Hypothetical protein; KEGG: aau:AAur_1389 Tn3 family transposase.
  
     0.615
ABW13795.1
KEGG: sma:SAV228 hypothetical protein.
 
     0.603
ABW15835.1
PFAM: protein of unknown function DUF820; KEGG: fal:FRAAL4181 hypothetical protein.
  
     0.549
ABW12818.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: transposase IS4 family protein; KEGG: sma:SAV7558 IS493-like transposase.
  
     0.533
ABW16443.1
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: mva:Mvan_4491 transposase, IS111A/IS1328/IS1533.
 
     0.505
ABW14162.1
PFAM: NERD domain protein; KEGG: sco:SCO6626 protein kinase.
  
     0.492
ABW13230.1
PFAM: Integrase catalytic region; KEGG: stp:Strop_4141 hypothetical protein.
       0.452
ABW14141.1
PFAM: transposase Tn3 family protein; KEGG: hit:NTHI0141 transposon Tn3 transposase.
  
     0.424
Your Current Organism:
Frankia sp. EAN1pec
NCBI taxonomy Id: 298653
Other names: F. sp. EAN1pec
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.