STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADP78092.1PFAM: protein of unknown function DUF721; KEGG: fal:FRAAL0006 hypothetical protein. (202 aa)    
Predicted Functional Partners:
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
  
 0.925
ADP78090.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
   
 0.909
ADP80231.1
DNA polymerase III, delta subunit; KEGG: fal:FRAAL1999 putative DNA-binding protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
 
   
 0.828
ADP78095.1
KEGG: fal:FRAAL0011 hypothetical protein.
 
     0.762
ADP78695.1
PFAM: glycosyl transferase family 39; KEGG: fal:FRAAL6290 putative dolichyl-phosphate-mannose--protein mannosyltransferase; putative membrane protein.
  
     0.730
ADP80351.1
KEGG: fal:FRAAL2121 hypothetical protein.
  
     0.728
ADP78694.1
Glycosyl transferase family 39; KEGG: fal:FRAAL6290 putative dolichyl-phosphate-mannose--protein mannosyltransferase; putative membrane protein; manually curated; PFAM: glycosyl transferase family 39.
  
     0.724
ADP79808.1
KEGG: fal:FRAAL5159 putative integral membrane protein.
  
     0.718
ADP80973.1
SMART: regulatory protein MerR; KEGG: fal:FRAAL2275 MerR family transcriptional regulator.
  
     0.718
ADP80354.1
PFAM: Protein of unknown function DUF3097; KEGG: fal:FRAAL2124 hypothetical protein.
  
     0.712
Your Current Organism:
Frankia inefficax
NCBI taxonomy Id: 298654
Other names: CECT 9037, DSM 45817, F. inefficax, Frankia inefficax Nouioui et al. 2017, Frankia sp. EuI1c, strain EuI1c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.