node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADP78843.1 | ADP79856.1 | FraEuI1c_0765 | FraEuI1c_1800 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | 0.866 |
ADP78843.1 | ADP81919.1 | FraEuI1c_0765 | FraEuI1c_3913 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | Hypothetical protein; KEGG: fal:FRAAL5353 putative ATP-dependent DNA helicase II. | 0.459 |
ADP78843.1 | ADP84128.1 | FraEuI1c_0765 | FraEuI1c_6144 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | Helicase domain protein; KEGG: fal:FRAAL1185 putative ATP-dependent DNA helicase; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; phosphoribosyltransferase; SMART: DEAD-like helicase; helicase domain protein. | 0.519 |
ADP78843.1 | ADP84684.1 | FraEuI1c_0765 | FraEuI1c_6714 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | KEGG: rer:RER_40510 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein. | 0.986 |
ADP78843.1 | ligA | FraEuI1c_0765 | FraEuI1c_1004 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.745 |
ADP78843.1 | polA | FraEuI1c_0765 | FraEuI1c_4916 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
ADP78843.1 | recA | FraEuI1c_0765 | FraEuI1c_1138 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.992 |
ADP78843.1 | topA | FraEuI1c_0765 | FraEuI1c_0318 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.991 |
ADP78843.1 | uvrB | FraEuI1c_0765 | FraEuI1c_4894 | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.737 |
ADP79856.1 | ADP78843.1 | FraEuI1c_1800 | FraEuI1c_0765 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | 0.866 |
ADP79856.1 | ADP81919.1 | FraEuI1c_1800 | FraEuI1c_3913 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | Hypothetical protein; KEGG: fal:FRAAL5353 putative ATP-dependent DNA helicase II. | 0.508 |
ADP79856.1 | ADP84128.1 | FraEuI1c_1800 | FraEuI1c_6144 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | Helicase domain protein; KEGG: fal:FRAAL1185 putative ATP-dependent DNA helicase; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; phosphoribosyltransferase; SMART: DEAD-like helicase; helicase domain protein. | 0.470 |
ADP79856.1 | ADP84684.1 | FraEuI1c_1800 | FraEuI1c_6714 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | KEGG: rer:RER_40510 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein. | 0.729 |
ADP79856.1 | ligA | FraEuI1c_1800 | FraEuI1c_1004 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.708 |
ADP79856.1 | polA | FraEuI1c_1800 | FraEuI1c_4916 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.942 |
ADP79856.1 | recA | FraEuI1c_1800 | FraEuI1c_1138 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.619 |
ADP79856.1 | topA | FraEuI1c_1800 | FraEuI1c_0318 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.836 |
ADP79856.1 | uvrB | FraEuI1c_1800 | FraEuI1c_4894 | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.958 |
ADP81919.1 | ADP78843.1 | FraEuI1c_3913 | FraEuI1c_0765 | Hypothetical protein; KEGG: fal:FRAAL5353 putative ATP-dependent DNA helicase II. | PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: fal:FRAAL6038 putative ATP-dependent DNA helicase. | 0.459 |
ADP81919.1 | ADP79856.1 | FraEuI1c_3913 | FraEuI1c_1800 | Hypothetical protein; KEGG: fal:FRAAL5353 putative ATP-dependent DNA helicase II. | DNA polymerase III, epsilon subunit; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein. | 0.508 |