STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADP82236.1KEGG: sma:SAV_659 AraC family transcription regulator; PFAM: ThiJ/PfpI domain-containing protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (318 aa)    
Predicted Functional Partners:
ADP79655.1
KEGG: gob:Gobs_4744 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
 0.723
ADP78642.1
KEGG: art:Arth_3902 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
 0.688
ADP80105.1
Transcriptional regulator, AraC family; KEGG: msm:MSMEG_6546 transcriptional regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
  
 0.616
ADP83139.1
Transcriptional regulator, AraC family; KEGG: msm:MSMEG_6546 transcriptional regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
  
 0.580
lexA
Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 
 0.506
ADP82237.1
Transcriptional regulator, SARP family; KEGG: fal:FRAAL0334 activator protein; PFAM: transcriptional activator domain; transcriptional regulator domain-containing protein; SMART: transcriptional regulator domain-containing protein.
  
  
 0.497
ADP82464.1
KEGG: cai:Caci_1479 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
 0.493
ADP80455.1
KEGG: vap:Vapar_4017 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
0.486
ADP83005.1
KEGG: cwo:Cwoe_2707 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
0.464
ADP83972.1
KEGG: cai:Caci_2492 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
0.440
Your Current Organism:
Frankia inefficax
NCBI taxonomy Id: 298654
Other names: CECT 9037, DSM 45817, F. inefficax, Frankia inefficax Nouioui et al. 2017, Frankia sp. EuI1c, strain EuI1c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.