STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADP83807.1KEGG: lch:Lcho_4056 hypothetical protein. (97 aa)    
Predicted Functional Partners:
ADP83806.1
Hypothetical protein; KEGG: sen:SACE_7171 mucin-associated surface protein.
       0.784
ADP83808.1
KEGG: cai:Caci_4056 hypothetical protein.
       0.782
ADP83809.1
PFAM: Lytic transglycosylase catalytic; KEGG: scb:SCAB_37651 hypothetical protein.
       0.781
ADP83810.1
KEGG: mav:MAV_3948 hypothetical protein.
       0.674
ADP83811.1
Hypothetical protein; KEGG: nfa:nfa42510 putative serine/threonine protein kinase.
       0.674
ADP83802.1
KEGG: nml:Namu_4710 hypothetical protein.
       0.664
ADP83803.1
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cai:Caci_8339 excision promoter, Xis.
       0.664
ADP83804.1
PFAM: transcription factor WhiB; KEGG: tfu:Tfu_0110 putative regulatory protein.
       0.664
ADP83805.1
Hypothetical protein; KEGG: fal:FRAAL5392 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.664
ADP83800.1
KEGG: nml:Namu_3203 hypothetical protein.
       0.460
Your Current Organism:
Frankia inefficax
NCBI taxonomy Id: 298654
Other names: CECT 9037, DSM 45817, F. inefficax, Frankia inefficax Nouioui et al. 2017, Frankia sp. EuI1c, strain EuI1c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.