STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADP84858.1HhH-GPD family protein; KEGG: fal:FRAAL0558 hypothetical protein; TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein. (187 aa)    
Predicted Functional Partners:
ADP81665.1
KEGG: fal:FRAAL3760 putative 5'-3' exonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2.
 
 
 0.671
ADP83098.1
KEGG: fal:FRAAL1883 putative exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
 0.663
ADP80339.1
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: mpa:MAP0341 ATP-dependent DNA ligase.
 
   
 0.653
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.616
ADP82937.1
HNH endonuclease; KEGG: fal:FRAAL4530 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
     0.594
ADP78181.1
DNA-(apurinic or apyrimidinic site) lyase; Manually curated; KEGG: fal:FRAAL6736 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; Belongs to the FPG family.
 
  
 0.590
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.577
ADP80645.1
HNH endonuclease; KEGG: fal:FRAAL4530 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
     0.564
ADP84962.1
Manually curated; PFAM: HNH endonuclease; KEGG: fal:FRAAL4530 hypothetical protein; SMART: HNH nuclease.
 
     0.564
ADP81083.1
HNH endonuclease; KEGG: fal:FRAAL4530 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
     0.563
Your Current Organism:
Frankia inefficax
NCBI taxonomy Id: 298654
Other names: CECT 9037, DSM 45817, F. inefficax, Frankia inefficax Nouioui et al. 2017, Frankia sp. EuI1c, strain EuI1c
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