STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000235425_05790Unannotated protein. (145 aa)    
Predicted Functional Partners:
GCA_000235425_05789
Unannotated protein.
 
  
 0.977
GCA_000235425_05474
Unannotated protein.
 
  
 0.606
GCA_000235425_07016
Unannotated protein.
 
   
 0.578
GCA_000235425_05791
Unannotated protein.
       0.486
GCA_000235425_05788
Unannotated protein.
       0.469
GCA_000235425_02158
Unannotated protein.
  
     0.423
GCA_000235425_00276
Unannotated protein.
  
  
 0.420
Your Current Organism:
Frankia saprophytica
NCBI taxonomy Id: 298655
Other names: CECT 9314, DSM 105290, F. saprophytica, Frankia saprophytica Nouioui et al. 2018, Frankia sp. CN3, strain CN3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.