STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000235425_06371Unannotated protein. (384 aa)    
Predicted Functional Partners:
GCA_000235425_06369
Unannotated protein.
 
     0.632
GCA_000235425_06016
Unannotated protein.
  
     0.566
GCA_000235425_06372
Unannotated protein.
       0.526
GCA_000235425_06368
Unannotated protein.
       0.525
GCA_000235425_06370
Unannotated protein.
       0.525
GCA_000235425_03750
Unannotated protein.
  
     0.458
GCA_000235425_06366
Unannotated protein.
       0.440
GCA_000235425_06367
Unannotated protein.
       0.440
Your Current Organism:
Frankia saprophytica
NCBI taxonomy Id: 298655
Other names: CECT 9314, DSM 105290, F. saprophytica, Frankia saprophytica Nouioui et al. 2018, Frankia sp. CN3, strain CN3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.