STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000235425_08274Unannotated protein. (181 aa)    
Predicted Functional Partners:
GCA_000235425_01195
Unannotated protein.
  
 
 0.693
GCA_000235425_08275
Unannotated protein.
       0.637
GCA_000235425_04205
Unannotated protein.
  
  
 0.557
GCA_000235425_08273
Unannotated protein.
       0.524
GCA_000235425_00218
Unannotated protein.
 
 
 0.520
GCA_000235425_04064
Unannotated protein.
  
  
 0.483
GCA_000235425_00243
Unannotated protein.
 
 
 0.476
GCA_000235425_04607
Unannotated protein.
  
  
 0.473
GCA_000235425_08276
Unannotated protein.
       0.470
GCA_000235425_05415
Unannotated protein.
  
 
 0.460
Your Current Organism:
Frankia saprophytica
NCBI taxonomy Id: 298655
Other names: CECT 9314, DSM 105290, F. saprophytica, Frankia saprophytica Nouioui et al. 2018, Frankia sp. CN3, strain CN3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.