STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_0897Bacterial regulatory helix-turn-helix s, AraC family protein. (264 aa)    
Predicted Functional Partners:
DA2_0895
Bacterial regulatory helix-turn-helix s, AraC family protein.
 
     0.734
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
     
 0.722
DA2_2828
Pyridine nucleotide-disulfide oxidoreductase family protein.
    
  0.714
DA2_2569
Bacterial regulatory helix-turn-helix s, AraC family protein.
  
     0.673
DA2_2271
Bacterial regulatory helix-turn-helix s, AraC family protein.
  
     0.666
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.651
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.645
DA2_1509
Bacterial regulatory helix-turn-helix s, AraC family protein.
  
     0.602
DA2_1886
Bacterial regulatory helix-turn-helix s, AraC family protein.
  
     0.601
DA2_0896
Sodium Bile acid symporter family protein.
 
    0.545
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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