STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DA2_1024ABC transporter family protein. (262 aa)    
Predicted Functional Partners:
DA2_1025
Hypothetical protein.
 0.999
nifU
fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.979
DA2_2494
ybhF domain protein.
    
 0.804
DA2_0838
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
     
 0.758
DA2_1511
ABC transporter family protein.
  
  
  0.737
DA2_0067
ABC 3 transport family protein.
  
 
 0.735
DA2_3287
recF/RecN/SMC N terminal domain protein.
  
  
  0.717
nifS
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
 
 0.682
DA2_0112
hesB-like domain-containing protein.
  
 
 0.681
DA2_0113
hesB-like domain-containing protein.
  
 
 0.681
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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