STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DA2_11112-hydroxyglutaryl-CoA dehydratase, D-component family protein. (379 aa)    
Predicted Functional Partners:
DA2_1112
coA-substrate-specific enzyme activase, putative domain protein.
 0.995
DA2_0406
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
    0.878
selB
Selenocysteine-specific translation elongation factor.
 
     0.589
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
     0.566
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
     0.539
DA2_1260
dsrE family protein.
  
    0.506
DA2_2828
Pyridine nucleotide-disulfide oxidoreductase family protein.
     
 0.502
ahpF
ahpF.
 
     0.485
rplP
50S ribosomal protein L16.
   
    0.416
nrdG
Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
  
    0.416
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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