ynjB protein (Desulfovibrio sp. A2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ynjB

Protein ynjB. (420 aa)

Predicted Functional Partners:

DA2_2776

0.916

DA2_2775

0.910

DA2_2209

0.885

DA2_2210

0.784

DA2_1372

0.773

DA2_1060

0.658

DA2_2494

0.640

DA2_0838

0.611

DA2_1373

0.584

DA2_1008

0.549

Your Current Organism:

Desulfovibrio sp. A2

NCBI taxonomy Id: 298701
Other names: D. sp. A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DA2_0838	DA2_1060	DA2_0838	DA2_1060	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	ABC transporter family protein.	0.847
DA2_0838	DA2_2209	DA2_0838	DA2_2209	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	ABC transporter family protein.	0.790
DA2_0838	DA2_2494	DA2_0838	DA2_2494	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	ybhF domain protein.	0.905
DA2_0838	DA2_2775	DA2_0838	DA2_2775	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	0.690
DA2_0838	DA2_2776	DA2_0838	DA2_2776	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	0.678
DA2_0838	ynjB	DA2_0838	DA2_1371	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	Protein ynjB.	0.611
DA2_1008	ynjB	DA2_1008	DA2_1371	Hypothetical protein.	Protein ynjB.	0.549
DA2_1060	DA2_0838	DA2_1060	DA2_0838	ABC transporter family protein.	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	0.847
DA2_1060	DA2_2209	DA2_1060	DA2_2209	ABC transporter family protein.	ABC transporter family protein.	0.840
DA2_1060	DA2_2494	DA2_1060	DA2_2494	ABC transporter family protein.	ybhF domain protein.	0.888
DA2_1060	DA2_2775	DA2_1060	DA2_2775	ABC transporter family protein.	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	0.844
DA2_1060	DA2_2776	DA2_1060	DA2_2776	ABC transporter family protein.	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	0.844
DA2_1060	ynjB	DA2_1060	DA2_1371	ABC transporter family protein.	Protein ynjB.	0.658
DA2_1372	DA2_1373	DA2_1372	DA2_1373	Bacterial extracellular solute-binding, 7 family protein.	Hypothetical protein.	0.584
DA2_1372	ynjB	DA2_1372	DA2_1371	Bacterial extracellular solute-binding, 7 family protein.	Protein ynjB.	0.773
DA2_1373	DA2_1372	DA2_1373	DA2_1372	Hypothetical protein.	Bacterial extracellular solute-binding, 7 family protein.	0.584
DA2_1373	ynjB	DA2_1373	DA2_1371	Hypothetical protein.	Protein ynjB.	0.584
DA2_2209	DA2_0838	DA2_2209	DA2_0838	ABC transporter family protein.	Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.	0.790
DA2_2209	DA2_1060	DA2_2209	DA2_1060	ABC transporter family protein.	ABC transporter family protein.	0.840
DA2_2209	DA2_2210	DA2_2209	DA2_2210	ABC transporter family protein.	Aminoglycoside phosphotransferase.	0.835