DA2_1950 protein (Desulfovibrio sp. A2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DA2_1950

Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (431 aa)

Predicted Functional Partners:

DA2_2485

0.949

DA2_0494

0.827

DA2_0499

0.755

pruA

0.671

DA2_0822

0.665

gabD1

0.665

DA2_1997

0.665

DA2_2048

0.665

gabD

0.665

DA2_3069

0.665

Your Current Organism:

Desulfovibrio sp. A2

NCBI taxonomy Id: 298701
Other names: D. sp. A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DA2_0494	DA2_0499	DA2_0494	DA2_0499	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	ACT domain protein.	0.817
DA2_0494	DA2_0822	DA2_0494	DA2_0822	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.665
DA2_0494	DA2_1950	DA2_0494	DA2_1950	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	0.827
DA2_0494	DA2_1997	DA2_0494	DA2_1997	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.665
DA2_0494	DA2_2048	DA2_0494	DA2_2048	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Aldehyde dehydrogenase family protein.	0.665
DA2_0494	DA2_2485	DA2_0494	DA2_2485	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Hypothetical protein.	0.945
DA2_0494	DA2_3069	DA2_0494	DA2_3069	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.665
DA2_0494	gabD	DA2_0494	DA2_2241	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.665
DA2_0494	gabD1	DA2_0494	DA2_0829	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Succinate-semialdehyde dehydrogenase [NADP+] 1.	0.665
DA2_0494	pruA	DA2_0494	DA2_2477	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Delta-1-pyrroline-5-carboxylate dehydrogenase, putative; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.	0.671
DA2_0499	DA2_0494	DA2_0499	DA2_0494	ACT domain protein.	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	0.817
DA2_0499	DA2_1950	DA2_0499	DA2_1950	ACT domain protein.	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	0.755
DA2_0822	DA2_0494	DA2_0822	DA2_0494	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	0.665
DA2_0822	DA2_1950	DA2_0822	DA2_1950	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	0.665
DA2_0822	pruA	DA2_0822	DA2_2477	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase, putative; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.	0.720
DA2_1950	DA2_0494	DA2_1950	DA2_0494	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	0.827
DA2_1950	DA2_0499	DA2_1950	DA2_0499	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	ACT domain protein.	0.755
DA2_1950	DA2_0822	DA2_1950	DA2_0822	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.665
DA2_1950	DA2_1997	DA2_1950	DA2_1997	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.	0.665
DA2_1950	DA2_2048	DA2_1950	DA2_2048	Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).	Aldehyde dehydrogenase family protein.	0.665