STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_1963Periplasmic [NiFe] hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (549 aa)    
Predicted Functional Partners:
DA2_1962
Periplasmic [NiFe] hydrogenase small subunit.
 
 0.996
DA2_0290
Periplasmic [NiFe] hydrogenase small subunit.
 
 0.986
hysB
Periplasmic [NiFeSe] hydrogenase, small subunit.
 
 0.986
DA2_3419
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 0.981
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
    
 0.910
hybD
Hydrogenase expression/formation protein.
 
 
 0.902
DA2_0292
Hydrogenase maturation protease family protein.
 
 
 0.902
DA2_0357
4Fe-4S binding domain protein.
  
 0.852
DA2_3026
Polysulfide reductase, NrfD family protein.
  
 
 0.838
DA2_3144
Polysulfide reductase, NrfD family protein.
  
 
 0.838
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.