STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_1998Putative membrane protein. (705 aa)    
Predicted Functional Partners:
DA2_1556
Hemolysin-type calcium-binding repeat family protein.
  
 
 0.599
trx
Thioredoxin; Belongs to the thioredoxin family.
    
   0.595
DA2_0644
Hypothetical protein.
    
   0.595
trxA3
trxA3.
    
   0.595
DA2_3914
Thioredoxin family protein.
    
   0.595
DA2_3523
ATPase, P-type (transporting), HAD super, subIC family protein.
   
  
 0.555
DA2_1997
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
       0.528
DA2_0207
Hypothetical protein.
  
 
 0.508
DA2_0208
Putative phage protein.
  
 
 0.508
DA2_1454
Mu transposase.
  
 
  0.475
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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