STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_2000Radical SAM superfamily protein. (517 aa)    
Predicted Functional Partners:
DA2_2001
ubiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family.
 
 
 0.928
DA2_1999
Methyltransferase domain protein.
 
 
 0.924
DA2_2003
Methyltransferase domain protein.
 
 
 0.623
DA2_2004
Hypothetical protein.
 
 
 0.615
DA2_2250
Glycosyl transferase 2 family protein.
 
     0.560
DA2_1838
Radical SAM superfamily protein.
  
     0.528
DA2_2836
Hypothetical protein.
  
     0.492
DA2_1998
Putative membrane protein.
       0.461
DA2_2002
Hypothetical protein.
       0.433
DA2_2808
Radical SAM superfamily protein; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.423
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.