Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DA2_2006Hypothetical protein. (509 aa)    
Predicted Functional Partners:
DA2_2005
Cytidylyltransferase family protein.
 
   
 0.811
DA2_2004
Hypothetical protein.
 
  
 0.682
DA2_2009
Transketolase, C-terminal domain protein.
 
     0.655
DA2_2007
Sialic acid synthase.
 
   
 0.648
DA2_2008
Short chain dehydrogenase family protein.
 
     0.580
DA2_2936
Flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.548
flgG
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.548
DA2_2010
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
     0.519
DA2_2016
SAF domain protein.
 
   
 0.514
DA2_2011
Short chain dehydrogenase family protein.
 
     0.508
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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