STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DA2_2012Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family. (373 aa)    
Predicted Functional Partners:
DA2_2011
Short chain dehydrogenase family protein.
 
 
 0.972
DA2_2015
Acetyltransferase family protein.
 
 
 0.885
DA2_2129
Lipopolysaccharides biosynthesis acetyltransferase domain protein.
 
 
 0.831
DA2_2116
NAD dependent epimerase/dehydratase family protein.
 
 
 0.739
DA2_2101
marR family protein.
  
 
 0.686
DA2_2016
SAF domain protein.
 
  
 0.659
DA2_2013
Methyltransferase domain protein.
 
    0.591
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.589
rfbG
CDP-glucose 4,6-dehydratase.
  
 
 0.577
DA2_2007
Sialic acid synthase.
  
  
 0.573
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.