Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DA2_2145HAMP domain protein. (604 aa)    
Predicted Functional Partners:
cheA
Chemotaxis histidine kinase.
 
 0.984
DA2_0518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 0.983
cheW
Chemotaxis signal transduction protein.
 
 0.981
DA2_0799
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 0.971
DA2_0863
cheW-like domain protein.
 
  0.969
DA2_2316
Response regulator.
 
 0.964
DA2_0800
cheW-like domain protein.
 
 0.954
DA2_3084
Response regulator.
 
 0.951
DA2_0881
cheW-like domain protein.
 
 0.950
DA2_3468
Response regulator.
 
 0.950
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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