Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DA2_2149Hypothetical protein. (379 aa)    
Predicted Functional Partners:
DA2_2150
Rhodanese-like domain protein.
       0.774
DA2_0589
Hypothetical protein; Belongs to the LarC family.
 
     0.612
DA2_1692
Hypothetical protein.
 
     0.563
DA2_0588
Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit.
 
     0.556
DA2_2561
4Fe-4S binding domain protein.
    
  0.482
DA2_2781
4Fe-4S binding domain protein.
    
  0.482
DA2_0255
Radical SAM superfamily protein.
 
     0.457
DA2_0590
Aldo/keto reductase family protein.
 
     0.410
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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