STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_2209ABC transporter family protein. (393 aa)    
Predicted Functional Partners:
potC
potC.
 
 0.948
DA2_0826
Binding--dependent transport system inner membrane component family protein.
 
 0.942
DA2_2253
potB.
 
 0.939
DA2_3495
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
 0.939
DA2_3496
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
 0.939
DA2_2775
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
 0.937
DA2_0827
potB.
 
 0.928
DA2_2776
Binding--dependent transport system inner membrane component family protein; Overlaps another CDS with the same product name.
 
 0.916
ynjB
Protein ynjB.
 
  
  0.885
DA2_0836
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 
 
0.868
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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