STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfrBacterioferritin. (201 aa)    
Predicted Functional Partners:
DA2_0253
STAS domain protein.
  
  
 0.769
DA2_0269
Anti-sigma factor antagonist.
   
  
 0.765
DA2_0360
Rubrerythrin family protein.
 
  
 0.629
DA2_0147
Ferritin, putative; Iron-storage protein.
     
 0.592
DA2_0270
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
   
  
 0.583
nifU
fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.569
DA2_0271
Response regulator.
   
    0.525
DA2_3896
HAMP domain protein.
   
    0.525
fur
Ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.490
DA2_0547
Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
 
  0.489
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.