STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DA2_2467TRAP transporter solute receptor, DctP family protein. (326 aa)    
Predicted Functional Partners:
DA2_2468
Tripartite ATP-independent periplasmic transporter, DctQ family.
 
  
 0.981
DA2_2469
TRAP transporter, DctM subunit.
  
 0.979
DA2_2231
Glycine radical family protein.
   
    0.652
DA2_3861
Glycine radical family protein.
   
    0.652
DA2_2293
Bug family protein.
  
     0.496
DA2_2291
Hypothetical protein.
  
     0.480
DA2_1378
Bacterial regulatory s, gntR family protein.
 
     0.463
Your Current Organism:
Desulfovibrio sp. A2
NCBI taxonomy Id: 298701
Other names: D. sp. A2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.